Bioluminescence
 
 Bioluminescence is the phenomenon that takes place in a limited number of organisms by which visible light is produced via a chemical reaction within their system.  It is basically a process in which potential chemical energy is turned into electrical (luminous) energy, without the usual accompaniment of intense heat.  In other words, it's really pretty cool, in more ways than one.  Ha!  Anyway, it is predominantly a marine occurrence, with a few rare exceptions seen in the forms of fireflies and glowing fungus, along with several other terrestrial creatures.
 

 
The Bioluminescence Cycle
 
Cool animated gif courtesy of Bioluminescence Info Page.
 
The bioluminescence cycle involves three main events.
 
1) Luciferin, the substrate of the light producing reaction, is subjected to an oxidation reaction with molecular O2, which the enzyme, luciferase, catalyzes.
 
2) As a result, light is given off, while the luciferin is converted into a deactivated form, oxyluciferin.
 
3) In an effort to restore luciferin activity, chemical energy in the form of ATP must be spent to transform oxyluciferin into luciferin.
 

 
Since ATP is a key component of the bioluminescence cycle, there have been developed assays to detect for ATP in biological tests by using bacterial luciferase enzymes.
 Also, a few other things should be noted regarding the luciferase enzymes.  First, although different luciferases are very diverse in their structure as well as the specific reactions that they enhance, they all oxidize their substrates to an excited product and release light energy. (3)  Additionally, the exact purpose for exhibiting bioluminescent behavior is not known, but there is speculation that it generally acts to attract potential symbiotic host organisms.
  
 
   This way to Luciferase Structure & Active Site
 
  I'm down with da TOC